Research tools | Beta

PeptideScholar Labs

Experimental tools, data products, and advanced workflows for researchers, clinicians, and advanced readers. This route now behaves like a standalone research surface rather than a generic content index.

Live

Evidence Comparator

Side-by-side clinical evidence comparison for 2 to 4 peptides. Compare benefits, side effects, evidence grades, mechanisms, and PubMed references across the peptide database.

Live

Sequence Analyzer

Calculate molecular weight, isoelectric point, hydropathy profile, and net charge from any amino acid sequence with interactive pH adjustment.

Live

WADA Monitor

Reference of WADA-prohibited peptides with 2026 Prohibited List citations, filtering by banned status, evidence grade, and category.

Live

Literature Alerts

Build a personalized PubMed watchlist for peptide research and generate RSS feeds, search URLs, and trial trackers.

Live

Stack Explorer

Explore known peptide combinations with synergy rationale, evidence grades, and safety warnings across healing, metabolic, and longevity stacks.

Live

Stack Generator

Start from a symptom or health goal and find peptides studied for that condition, with evidence grades and safety warnings attached.

Live

Structure Predictor

Predict 3D peptide structures through the ESMFold API and export PDB output for external visualization.

Live

Community Stacks

Browse unverified community stack reports with dosage transparency, observed effects, and side-effect notes.

Data Products

Structured endpoints for teams that want reference data without scraping the editorial site.

REST API

Peptide Database API

Read-only JSON API for the full peptide dataset, including benefits, side effects, references, and regulatory status.

GET/api/peptides

Peptide Detail API

Retrieve a single peptide record by slug with complete structured evidence, references, and metadata.

GET/api/peptides/{slug}
// List all peptides
curl https://peptidescholar.com/api/peptides

// Get a single peptide
curl https://peptidescholar.com/api/peptides/semaglutide

// Response includes: name, slug, type, category, evidenceLevel,
// fdaStatus, wadaBanned, benefits, sideEffects, refs, and more.

AI Models for Peptide Research

These are computational references for structure or sequence analysis, not synthesis systems.

Computational tools

AlphaFold 2 / 3

DeepMind / Isomorphic Labs
Open source

Predicts 3D protein structures from amino acid sequences with near-experimental accuracy, which is useful for peptide folding and receptor-binding interpretation before synthesis.

Access model

ProteinMPNN

Baker Lab (University of Washington)
Open source

Protein design neural network that generates amino acid sequences for defined protein backbones and helps with constrained peptide design work.

Access model

RFdiffusion

Baker Lab (University of Washington)
Open source

Diffusion model for de novo protein and peptide design that can generate new backbones before sequence selection.

Access model

ESM-2 / ESMFold

Meta AI
Low-resource friendlyOpen source

Protein language model that predicts structures and exposes sequence embeddings that can be used for stability and function analysis.

Access model

ColabFold

Mirdita et al.
Low-resource friendlyOpen source

Accelerated AlphaFold workflow in Google Colab that reduces the local infrastructure needed for peptide-sized sequence work.

Access model

OmegaFold

HeliXon
Open source

Single-sequence structure prediction model that avoids multiple sequence alignments and can be useful for de novo designed sequences.

Access model
What these models doThey help predict how a peptide may fold, bind, or behave structurally before synthesis. Actual chemical synthesis still requires a lab workflow or contract manufacturer.

Labs Roadmap

The tooling surface is already broader than the landing page styling suggested. This puts the roadmap into the same structured system as the rest of the labs subsite.

Done
Evidence Comparator
Side-by-side peptide comparison with PubMed references
Done
Sequence Analyzer
Molecular weight, pI, hydropathy, and charge calculations
Done
WADA Monitor
Banned peptide reference with 2026 Prohibited List citations
Done
Stack Explorer
Known combinations with synergy rationale and safety warnings
Done
Stack Generator
Symptom-based peptide finder with evidence grades and FDA status
Done
Structure Predictor
3D peptide structure prediction via the ESMFold API
Done
Community Stacks
User-submitted stack reports with transparency notes
Planned
Dataset Export
Bulk CSV and JSON downloads of structured peptide data
Done
Literature Alert System
PubMed RSS aggregation for saved watchlists
Research use onlyLabs tools and data products are intended for research, education, and reference purposes. They do not constitute medical advice, dosing recommendations, or clinical guidance.

Distinct research surface

Labs now reads like its own product area, which is the same direction the stack and shop surfaces should follow when they split into their own sub-sites.

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